Package: evolved 1.0.0
Matheus Januario
evolved: Open Software for Teaching Evolutionary Biology at Multiple Scales Through Virtual Inquiries
"Evolutionary Virtual Education" - 'evolved' - provides multiple tools to help educators (especially at the graduate level or in advanced undergraduate level courses) apply inquiry-based learning in general evolution classes. In particular, the tools provided include functions that simulate evolutionary processes (e.g., genetic drift, natural selection within a single locus) or concepts (e.g. Hardy-Weinberg equilibrium, phylogenetic distribution of traits). More than only simulating, the package also provides tools for students to analyze (e.g., measuring, testing, visualizing) datasets with characteristics that are common to many fields related to evolutionary biology. Importantly, the package is heavily oriented towards providing tools for inquiry-based learning - where students follow scientific practices to actively construct knowledge. For additional details, see package's vignettes.
Authors:
evolved_1.0.0.tar.gz
evolved_1.0.0.zip(r-4.5)evolved_1.0.0.zip(r-4.4)evolved_1.0.0.zip(r-4.3)
evolved_1.0.0.tgz(r-4.4-any)evolved_1.0.0.tgz(r-4.3-any)
evolved_1.0.0.tar.gz(r-4.5-noble)evolved_1.0.0.tar.gz(r-4.4-noble)
evolved_1.0.0.tgz(r-4.4-emscripten)evolved_1.0.0.tgz(r-4.3-emscripten)
evolved.pdf |evolved.html✨
evolved/json (API)
NEWS
# Install 'evolved' in R: |
install.packages('evolved', repos = c('https://mjanuario.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/auler-j/evolved/issues
- ammonoidea_fossil - Occurrences of ammonoid fossils
- birds_spp - Birds species list
- cytOxidase - Cytochrome Oxidase sequences
- data_whales - Whale body size and speciation rates
- dinos_fossil - Occurrence of dinosaur fossils
- mammals_fossil - Occurrences of mammal fossils
- mammals_spp - Mammals species list
- timeseries_fossil - Fossil Time series
- trilob_fossil - Occurrence of trilobite fossils
- whale_phylo - Whale Phylogeny
Last updated 3 days agofrom:41dc0d76d1. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 20 2024 |
R-4.5-win | OK | Dec 20 2024 |
R-4.5-linux | OK | Dec 20 2024 |
R-4.4-win | OK | Dec 20 2024 |
R-4.4-mac | OK | Dec 20 2024 |
R-4.3-win | OK | Dec 20 2024 |
R-4.3-mac | OK | Dec 20 2024 |
Exports:calcFossilDivTTcheckAndFixUltrametriccountSeqDiffsestimateSpeciationfitCRBDis.ProteinSeqlttPlotNatSelSimOneGenHWSimplotNatSelplotPaintedWhalesplotProteinSeqplotRawFossilOccsplotWFDriftsimulateBirthDeathRichsimulateTreeWFDriftSim
Dependencies:apecliclusterGenerationcodacodetoolscombinatcpp11DEoptimdeSolvedigestdiversitreedoParallelexpmfastmatchforeachgenericsglueigraphiteratorslatticelifecyclemagrittrmapsMASSMatrixmnormtnlmenumDerivoptimParallelphangornphytoolspkgconfigquadprogRcpprlangscatterplot3dsubplexvctrs
Birth-death models and deep time
Rendered frombirthdeath_deeptime.Rmd
usingknitr::rmarkdown
on Dec 20 2024.Last update: 2024-05-17
Started: 2024-04-20
Birth-death models and molecular phylogenies
Rendered frombirthdeath_phylogenies.Rmd
usingknitr::rmarkdown
on Dec 20 2024.Last update: 2024-11-28
Started: 2024-05-09
Clocks and Rocks
Rendered fromrocks_and_clocks.Rmd
usingknitr::rmarkdown
on Dec 20 2024.Last update: 2024-11-28
Started: 2023-12-24
Allele frequency change and selection
Rendered fromdeeptime_clocks.Rmd
usingknitr::rmarkdown
on Dec 20 2024.Last update: 2024-05-17
Started: 2024-03-26
Introduction to the fossil record
Rendered fromdeeptime_rocks.Rmd
usingknitr::rmarkdown
on Dec 20 2024.Last update: 2024-11-28
Started: 2024-03-26
Introduction to R
Rendered fromintro_R.Rmd
usingknitr::rmarkdown
on Dec 20 2024.Last update: 2024-11-28
Started: 2024-03-26
Phylogenies and diversification
Rendered fromphylogenies_and_diversification.Rmd
usingknitr::rmarkdown
on Dec 20 2024.Last update: 2024-05-17
Started: 2024-01-08
Sampling alleles, genetic drift and effective population size
Rendered frompopgen_drift.Rmd
usingknitr::rmarkdown
on Dec 20 2024.Last update: 2024-11-28
Started: 2024-03-26
Introduction to evolutionary genetics
Rendered frompopgen_intro.Rmd
usingknitr::rmarkdown
on Dec 20 2024.Last update: 2024-05-17
Started: 2024-03-26
Tools for population genetics
Rendered frompopulation_genetics.Rmd
usingknitr::rmarkdown
on Dec 20 2024.Last update: 2024-03-26
Started: 2023-05-18
Allele frequency change and selection
Rendered frompopgen_selection.Rmd
usingknitr::rmarkdown
on Dec 20 2024.Last update: 2024-11-28
Started: 2024-03-26